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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g045494m | ||||||||
Common Name | CISIN_1g045494mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRAS | ||||||||
Protein Properties | Length: 493aa MW: 55279.9 Da PI: 6.5386 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 246.9 | 8.1e-76 | 157 | 389 | 1 | 250 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lLlecA a+s ++l +a+++L +l ++asp+g + +R++ayf++A+a+r+++s+ ++++ l+ +++ a+++f++vsP++ orange1.1g045494m 157 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMASRVLNSWLGICSPLTNH-------KSVHCAFQVFNNVSPFI 241 5789*******************************9999*********************99755443.......34567899********* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 kf+h+t NqaIlea+++ +rvHiiD+di+qGlQWpaL++ La+R+egpp+lR+Tg+g s e l etg++L +fA++lg++fef++ +a orange1.1g045494m 242 KFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGT----SMEVLLETGKQLFNFAKRLGLSFEFHP-IA 328 **********************************************************....***************************.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 k++ d++ ++L++++gE+laV++ h+l+d +++ + +L+l+ +lsP+vv++veqe++h++ orange1.1g045494m 329 KKFGDIDASMLQLRRGETLAVHWLQ--HSLYDATGPDWK----TLRLLEELSPRVVTLVEQEISHGG 389 ************************9..999999999888....*********************964 PP | |||||||
2 | GRAS | 65.3 | 1.2e-20 | 391 | 487 | 279 | 374 |
GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368 + +r+ vE+ ll rei n++a g +r + ++++Wr+ l + GF +vp+s + ++qa+l+l++++ +gy++ +g+l+lgWk+ +L+ orange1.1g045494m 391 DPNRHRVEHCLLYREINNILAIGGPARSGED-KFKHWRSELARcNGFAQVPMSGNSMAQAQLILNMFPpAHGYSLIPGDGTLMLGWKGTSLF 481 67899*********************77665.5********9956*********************************************** PP GRAS 369 svSaWr 374 ++S+W+ orange1.1g045494m 482 TASSWT 487 *****6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.742 | 131 | 492 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-73 | 157 | 389 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-18 | 391 | 487 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MRGGFEVVHG ALDMMQHYEQ WDYPSIGFPN PCPNSFTKPP PPPLAVIDNR SVNLERNELS 60 EWVEHITKQL IDDMPDSSTN NADHGLQPDH HHTTIGPCED NSIIPSVLGD LRPRKMMRIS 120 YDGEESFSWS NEQQLGVNQS NINCESHNKL DEQGLRLITL LLECAVAISV DNLGEAHRML 180 LELTQMASPY GPSCAERVVA YFAKAMASRV LNSWLGICSP LTNHKSVHCA FQVFNNVSPF 240 IKFAHFTSNQ AILEAFHRRD RVHIIDLDIM QGLQWPALFH ILATRNEGPP HLRMTGMGTS 300 MEVLLETGKQ LFNFAKRLGL SFEFHPIAKK FGDIDASMLQ LRRGETLAVH WLQHSLYDAT 360 GPDWKTLRLL EELSPRVVTL VEQEISHGGD DPNRHRVEHC LLYREINNIL AIGGPARSGE 420 DKFKHWRSEL ARCNGFAQVP MSGNSMAQAQ LILNMFPPAH GYSLIPGDGT LMLGWKGTSL 480 FTASSWTSHA SR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-38 | 161 | 486 | 8 | 374 | GRAS family transcription factor containing p |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443804.1 | 0.0 | hypothetical protein CICLE_v10019735mg | ||||
Refseq | XP_006479507.2 | 0.0 | PREDICTED: protein SCARECROW-like | ||||
Swissprot | Q9M384 | 1e-128 | SCR_ARATH; Protein SCARECROW | ||||
TrEMBL | A0A067FB61 | 0.0 | A0A067FB61_CITSI; Uncharacterized protein | ||||
STRING | POPTR_0005s24850.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16005 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-129 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g045494m |