PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045494m
Common NameCISIN_1g045494mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 493aa    MW: 55279.9 Da    PI: 6.5386
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045494mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS246.98.1e-761573891250
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                        l++lLlecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+a+r+++s+ ++++ l+         +++  a+++f++vsP++
  orange1.1g045494m 157 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMASRVLNSWLGICSPLTNH-------KSVHCAFQVFNNVSPFI 241
                        5789*******************************9999*********************99755443.......34567899********* PP

               GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                        kf+h+t NqaIlea+++ +rvHiiD+di+qGlQWpaL++ La+R+egpp+lR+Tg+g     s e l etg++L +fA++lg++fef++ +a
  orange1.1g045494m 242 KFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGT----SMEVLLETGKQLFNFAKRLGLSFEFHP-IA 328
                        **********************************************************....***************************.7* PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                        k++ d++ ++L++++gE+laV++    h+l+d +++  +    +L+l+ +lsP+vv++veqe++h++
  orange1.1g045494m 329 KKFGDIDASMLQLRRGETLAVHWLQ--HSLYDATGPDWK----TLRLLEELSPRVVTLVEQEISHGG 389
                        ************************9..999999999888....*********************964 PP

2GRAS65.31.2e-20391487279374
               GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                        + +r+ vE+ ll rei n++a  g +r  +  ++++Wr+ l +  GF +vp+s + ++qa+l+l++++  +gy++   +g+l+lgWk+ +L+
  orange1.1g045494m 391 DPNRHRVEHCLLYREINNILAIGGPARSGED-KFKHWRSELARcNGFAQVPMSGNSMAQAQLILNMFPpAHGYSLIPGDGTLMLGWKGTSLF 481
                        67899*********************77665.5********9956*********************************************** PP

               GRAS 369 svSaWr 374
                        ++S+W+
  orange1.1g045494m 482 TASSWT 487
                        *****6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.742131492IPR005202Transcription factor GRAS
PfamPF035142.8E-73157389IPR005202Transcription factor GRAS
PfamPF035144.1E-18391487IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MRGGFEVVHG ALDMMQHYEQ WDYPSIGFPN PCPNSFTKPP PPPLAVIDNR SVNLERNELS  60
EWVEHITKQL IDDMPDSSTN NADHGLQPDH HHTTIGPCED NSIIPSVLGD LRPRKMMRIS  120
YDGEESFSWS NEQQLGVNQS NINCESHNKL DEQGLRLITL LLECAVAISV DNLGEAHRML  180
LELTQMASPY GPSCAERVVA YFAKAMASRV LNSWLGICSP LTNHKSVHCA FQVFNNVSPF  240
IKFAHFTSNQ AILEAFHRRD RVHIIDLDIM QGLQWPALFH ILATRNEGPP HLRMTGMGTS  300
MEVLLETGKQ LFNFAKRLGL SFEFHPIAKK FGDIDASMLQ LRRGETLAVH WLQHSLYDAT  360
GPDWKTLRLL EELSPRVVTL VEQEISHGGD DPNRHRVEHC LLYREINNIL AIGGPARSGE  420
DKFKHWRSEL ARCNGFAQVP MSGNSMAQAQ LILNMFPPAH GYSLIPGDGT LMLGWKGTSL  480
FTASSWTSHA SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-381614868374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443804.10.0hypothetical protein CICLE_v10019735mg
RefseqXP_006479507.20.0PREDICTED: protein SCARECROW-like
SwissprotQ9M3841e-128SCR_ARATH; Protein SCARECROW
TrEMBLA0A067FB610.0A0A067FB61_CITSI; Uncharacterized protein
STRINGPOPTR_0005s24850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160051115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-129GRAS family protein